Hi,
I could change alignment of twitter logo, i added div tab which wrap my twitter logo as following:
<!-- //LISTING FRIENDS -->
<div style="float:right"> <!-- my div wrapper -->
<form style="" method="POST" action="http://api.twitter.com/1/friendships/create.xml?screen_name=joomlart&follow=true" id="form_follow" target="hidden_frame">
....
</form>
</div>
I set float:right for align right, and float:left for align left, edit on “helper.php” file or “tmpl/default.php” file
If the above does not solve your problems, please provide me your screenshots, or site link where you are using ja_twitter module. I would like to have a look.