You have to change some code in the index.php of the template. I can give you an example how it is done in the template “Ja-Antares”:
<?php if (strtolower($option) != ‘com_frontpage’){ ?>
<div id=”ja-pathway”>
<?php mosPathway(); ?>
</div>
<?php } ?>
Here the pathway is set to shop up everywhere except on the frontpage “com_frontpage”. Because you have another component as your “Home” you should use this code but instead of “com_frontpage” you should use “com_magazine”, use this:
<?php if (strtolower($option) != ‘com_magazine’){ ?>
<div id=”ja-pathway”>
<?php mosPathway(); ?>
</div>
<?php } ?>
You see that with this method you can decide where the pathway should show. Btw. this is also possible with other modules.